HI-FRIENDS SDC2
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The SKA Data Challenge 2
Methodology
Workflow Description
Workflow installation
Workflow execution
SDC2 HI-FRIENDS results
SDC2 Reproducibility award
Developers
Acknowledgments
HI-FRIENDS SDC2
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Welcome to HI-FRIENDS SDC2’s documentation!
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Welcome to HI-FRIENDS SDC2’s documentation!
¶
The SKA Data Challenge 2
The HI-FRIENDS solution to the SDC2
Workflow general description
The HI-FRIENDS team
Methodology
Data exploration
Feedback from the workflow and logs
Configuration
Unit tests
Software managed and containerization
Check conformance to coding standards
Workflow Description
Workflow definition diagrams
Workflow file structure
Output products
Snakemake execution and diagrams
Workflow installation
Dependencies
Installation
1. Get conda
2. Get the pipeline and install snakemake
Deploy in containers
Docker
Singularity
Podman
Use tarball of the workflow
Use myBinder
Workflow execution
Preparation
Basic usage and verification of the workflow
Execution on a data cube
SDC2 HI-FRIENDS results
Our solution
Score
SDC2 Reproducibility award
Reproducibility of the solution check list
Developers
define_chunks module
eliminate_duplicates module
filter_catalog module
run_sofia module
sofia2cat module
split_subcube module
Acknowledgments
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